PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012237.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 301aa    MW: 32672.7 Da    PI: 8.9877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012237.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.7e-33291212103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++e+++++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll+ i+
    Do012237.1  29 FLTKTHQMVEEPSTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGEQGLLSGIR 116
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    Do012237.1 117 RRKST 121
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3525118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3225118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5425118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-2929118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEASEAVAVA ASSKQQSGGN RAGGGPAPFL TKTHQMVEEP STDEVISWAE QGRSFVVWKP  60
VELARDLLPL HFKHCNFSSF VRQLNTYGFR KVVPDRWEFA NDNFRRGEQG LLSGIRRRKS  120
TTPQSSKQSG GSAVNVAFPP PLPPAPPASA TTSGGNERSS SSASSPPRAD LTSENEQLKK  180
DNHTLATELA QARRHCEELL GFLSRFLDVR QLDLGMLMQE DVVRAAGDAH QQCRAVADQL  240
ERGGEEGKGV KLFGVLLKDA ARKRGRCEEA AASERPIKMI RIGEPWVGVP SSGPGRFGGE  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-202212212124Heat shock factor protein 1
5d5u_B2e-202911829129Heat shock factor protein 1
5d5v_B2e-202911829129Heat shock factor protein 1
5d5v_D2e-202911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957012.11e-166heat stress transcription factor B-1
SwissprotQ67TP91e-133HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A1E5VP740.0A0A1E5VP74_9POAL; Heat stress transcription factor B-1
STRINGPavir.Bb02269.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-57heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]