PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do012258.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 363aa MW: 37102 Da PI: 9.4725

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do012258.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.6e-38	69	126	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Do012258.1 69 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 126 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.9E-32	71	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	72	126	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	72	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDQLKSVNDG NPASLPLLLH PIVSNPSPTS SSSTSSRSSA QQQQQRSTSA TSSPQGQGQG 60 QHQGQGAEQA PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG 120 CRKPRPMPAP VVKPAVSCKG VGGAPSLGLG VGLGMGAGPV PWAPSQQAAA AQLMALLNSA 180 RGVQGGHGGS NMHRLLGLDT MPHLPLQVLP GAGNAGGAPG SLWPPAAPRP IPTPPHMDSQ 240 LGMGPLGLGQ HDVLSSLGLK LPPPSSSPAA SYYSDQLHAV VSSAAGGRPH EYDAPGATSL 300 PCTSAVTSLP PSVSSISAAL SSATVGLDLP VVSITVPEMQ YWPGPAAMSV AWPDLPTPNG 360 AFP

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDQLKSVNDG NPASLPLLLH PIVSNPSPTS SSSTSSRSSA QQQQQRSTSA TSSPQGQGQG  60
QHQGQGAEQA PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG  120
CRKPRPMPAP VVKPAVSCKG VGGAPSLGLG VGLGMGAGPV PWAPSQQAAA AQLMALLNSA  180
RGVQGGHGGS NMHRLLGLDT MPHLPLQVLP GAGNAGGAPG SLWPPAAPRP IPTPPHMDSQ  240
LGMGPLGLGQ HDVLSSLGLK LPPPSSSPAA SYYSDQLHAV VSSAAGGRPH EYDAPGATSL  300
PCTSAVTSLP PSVSSISAAL SSATVGLDLP VVSITVPEMQ YWPGPAAMSV AWPDLPTPNG  360
AFP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do012258.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726976	0.0	KJ726976.1 Zea mays clone pUT3677 C2C2-DOF transcription factor (DOF25) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981654.1	1e-170	dof zinc finger protein 4
TrEMBL	A0A1E5W5I0	0.0	A0A1E5W5I0_9POAL; Dof zinc finger protein DOF1.7
STRING	Si039685m	1e-170	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-31	Dof family protein