PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012309.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 154aa    MW: 17461.7 Da    PI: 7.8721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012309.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.51.3e-19121401126
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdk 90 
                 lp+G+rF+ t  el+++yL+  v+        e e ++ ++d+y+v+P +L +   ++ +++ +wyf +  + k+ + g+r nr +   g W+  g+  
  Do012309.1  12 LPVGYRFKATSRELIHYYLNTWVTCPGqvpfGEPEGIVCTADVYSVDPGTLTSrlsHFGHDDGNWYFLCVIRWKAGNvGTRMNRtVQGGGSWHGLGNRI 110
                 799*******************9987765642223468888**********853445555777******999888877******5556899*****987 PP

         NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmhey 126
                 +v +      g ++t+ +    +  g k++W+m+e+
  Do012309.1 111 KVRR---CPYGYRQTFEYR---NAGGDKCTWLMEEF 140
                 7766...899*******95...78899********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-213145IPR003441NAC domain
PROSITE profilePS5100522.18912154IPR003441NAC domain
PfamPF023652.3E-1313140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEMEENARWP DLPVGYRFKA TSRELIHYYL NTWVTCPGQV PFGEPEGIVC TADVYSVDPG  60
TLTSRLSHFG HDDGNWYFLC VIRWKAGNVG TRMNRTVQGG GSWHGLGNRI KVRRCPYGYR  120
QTFEYRNAGG DKCTWLMEEF GSALPKATDG EGIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.15e-79NAC domain-containing protein 30-like
TrEMBLA0A1E5VXB21e-112A0A1E5VXB2_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Hb01963.1.p1e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-12NAC domain containing protein 96