PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012496.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 454aa    MW: 49967.6 Da    PI: 6.6017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012496.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.55.1e-09393447253
        FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerr 53 
                 f+n+YA  +GF+v +++ +++   krn+ei k +++C+++gk+ ++k++ ++e++
  Do012496.1 393 FFNFYAFLAGFEVAITHVTRTtdkKRNNEIFKVEMKCKCHGKPPKKKTTGVEEEE 447
                 9***************9999888899*****************999988444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.207.9E-1727117No hitNo description
PROSITE profilePS5001129.07931300IPR000719Protein kinase domain
SMARTSM002201.2E-3731269IPR000719Protein kinase domain
SuperFamilySSF561124.32E-5035216IPR011009Protein kinase-like domain
PfamPF000693.5E-3736216IPR000719Protein kinase domain
PROSITE patternPS0010703760IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.109.0E-31118216No hitNo description
PROSITE patternPS001080156168IPR008271Serine/threonine-protein kinase, active site
PfamPF031012.5E-7393446IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAACPEPAAA VRNHAGLKRR RIAVGSTEQY EETNCRLGKG AFGAVVKARH RATGRTVAIK  60
RLAAAQQGGS EALLREARFH EEACAGGTNP FVVGFHGVVR VPGTFDLRLV MECVGPSLHD  120
LLRQRPRGSP PLPEATVRAA MFQLLTGAKK MHDXNIVHRD IKPQNILVGD GHSVVKICDF  180
GLAMSTDERQ PYEPAGTMWY MAPEMLLEKP DYDTKVAELV AAMACNARHA QELGTFVPHH  240
ASATPRGLVI NLQSLAACDL YQCDCDPYIQ KRLTDECKVI SCAEITLYIT SNTIEGSIWF  300
TNEYICAGSR CNKYSLCCII VTALEDATAS INTLEATAGE EVNGNQVLTE EEVEAFIRSE  360
QLAASEGNNA GFDSKYTPHI GMEFNNKDEA HHFFNFYAFL AGFEVAITHV TRTTDKKRNN  420
EIFKVEMKCK CHGKPPKKKT TGVEEEEIQV ETNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bgq_A5e-213721020188CYCLIN-DEPENDENT KINASE-LIKE 5
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11721KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.29e-13WRKY family protein