PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012520.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 328aa    MW: 35613.6 Da    PI: 10.3608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012520.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011102119320
                 ETTTTEEESSHHHHHHHH CS
     zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                 C  Cg++F+ ++ L rH 
  Do012520.1 102 CRVCGRRFRARDALLRHF 119
                 *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094100128IPR007087Zinc finger, C2H2
PROSITE patternPS000280102123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFPPLSHLRR RVLAAAPKVL APPFLRPFSA AAPASHKPTT GVAVLWDLAA SRPPTTLPLY  60
DATVRLHLAA TSFGRLRLSA AFVHPSYRLP APAGTAATTH LCRVCGRRFR ARDALLRHFD  120
AIHAREHAKR LARIDSSRGD RRVRLAAALS LKLSKYEKAA RELTAGAAAA SPADELGRAG  180
VRVALTRTPA ASLRERAQQV LDEGSVGCLM LVSGHEELAS LLRVVRERGV RSVVVGGESG  240
LARWADVGFS WAEVIAGKAR KAAPSVSGKW RDKDVLRGLE WRYEEADDEE EVAFEDSDGD  300
GVEELARRGK GKPWWMLDSD GEDCRDGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.10.0uncharacterized protein LOC112898963
TrEMBLA0A1E5W2F70.0A0A1E5W2F7_9POAL; Uncharacterized protein
STRINGPavir.J22986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-38C2H2 family protein