PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012525.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 237aa    MW: 24854.1 Da    PI: 8.4975
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012525.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP29.62.4e-094071738
         TCP  7 rhskihTkvggRdRRvRlsaecaarfFdLqde 38
                r  ++hTk +gR+RR+ + a+caar+  L++ 
  Do012525.1 40 RYRDRHTKMEGRGRRILMAAPCAARVARLTRG 71
                678***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-54270IPR005333Transcription factor, TCP
PfamPF142156.5E-20117237IPR025610Transcription factor MYC/MYB N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLLRPAAGLL LRLAHIFVEP MPVEFPGGGL QLANPRPAPR YRDRHTKMEG RGRRILMAAP  60
CAARVARLTR GGGGGGGGGT DAGLFAAVLG RDTAHHLATT PPHLDALAAS AAAPAELQAR  120
LQHLVERSGG VWTYDIFWQE SRGAGGGGCA VLGWGDGHCR DGAWGPHDAA AVKEERSAAR  180
KRALLRLHAL YGGGDDDEGA DYTLRLDRFT GAEMYFLASM YFSSPEGAGG PGHALAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-131172359127Transcription factor MYC3
4rqw_B1e-131172359127Transcription factor MYC3
4rs9_A1e-131172359127Transcription factor MYC3
4yz6_A1e-131172359127Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150726.23e-65uncharacterized protein LOC100284359
TrEMBLA0A1E5W2D41e-165A0A1E5W2D4_9POAL; Uncharacterized protein
STRINGGRMZM2G159937_P011e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-09TCP family protein