PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012550.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 184aa    MW: 18893.6 Da    PI: 10.3936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012550.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-0533731254
                HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 R+ + s f+eL  +lP  +   +s+  sK ei+  A+  +k L
  Do012550.1 33 QRRTVSSLFAELGAMLPDlP---TSRPASKEEIVDAATARVKAL 73
                589999************66...9999**********9988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.9052173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-42775No hitNo description
Gene3DG3DSA:4.10.280.102.7E-42976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-63086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAGGGWLPLD LSLATAGASA SVSSAGERRP RVQRRTVSSL FAELGAMLPD LPTSRPASKE  60
EIVDAATARV KALEETAAVL ETYRGVRGHP RYGSAGAGTA TATPRPPEVA VAVGTVCFSA  120
RLPAPRPGSV TRVLEAFHRR GVEVLVVTVA RHGHGHGAAV VTVTAAAAPP DVLEMIRADI  180
AGIH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680863.15e-68uncharacterized protein LOC111256704
TrEMBLA0A1E5WL371e-123A0A1E5WL37_9POAL; Uncharacterized protein
STRINGSi025174m2e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931