PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012584.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 210aa    MW: 22121.6 Da    PI: 4.8284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012584.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-182474156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                + y+G+r++   g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++aa+++l+g+
  Do012584.1 24 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPTPEMAAAAYDAAALALRGA 74
                68*****975..*********954...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-122473IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-182581IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-272581IPR001471AP2/ERF domain
PROSITE profilePS5103220.1392581IPR001471AP2/ERF domain
SMARTSM003801.7E-242587IPR001471AP2/ERF domain
CDDcd000183.49E-142681No hitNo description
PRINTSPR003672.3E-62637IPR001471AP2/ERF domain
PRINTSPR003672.3E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEQEQDAAGT PLPLRRVRAD TRHPVYRGIR YRGGKWVSEI REPRKSNRIW LGTYPTPEMA  60
AAAYDAAALA LRGAEAALNF PGAAASRPAP ASCSPDDIRA AAAAAAAMVG PGERAGHSHL  120
PHAAAAASAS TSRADDAGAA GGASAWDQRA GEKRIVDEDD VFQMPRLLEG MAEGLMMSPP  180
RLSPTADGAV LLLPEEEDEN DDGMSLWDHS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342365e-84AC134236.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0056G13, complete sequence.
GenBankAK1089305e-84AK108930.1 Oryza sativa Japonica Group cDNA clone:002-153-A05, full insert sequence.
GenBankAP0149595e-84AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-84CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797835.12e-86ethylene-responsive transcription factor ERF027-like
SwissprotQ9SJR01e-39ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1E5WJH01e-146A0A1E5WJH0_9POAL; Uncharacterized protein
STRINGSi039264m6e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-24ERF family protein