PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012652.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 250aa    MW: 27417.9 Da    PI: 4.6017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012652.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28176229255
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege 55 
                 +DgynWrKYGqK+v+gse+ rsYY+Ct+++C++kkkvers  d+++++i+Y+g 
  Do012652.1 176 EDGYNWRKYGQKQVTGSENLRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGG 229
                 8***************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.795170228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-23173228IPR003657WRKY domain
SuperFamilySSF1182906.54E-21174228IPR003657WRKY domain
SMARTSM007742.8E-26175234IPR003657WRKY domain
PfamPF031064.2E-20176228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRIMFDAISV TNETSFVHPS SGGVEEVDGA TGGYDNIDGE GGEQLPVTPN VVSAGVHVLV  60
GDELLPEPVC LPDEHHLLDG HVLGLREEER DEDGHDDDPP CEELEEAELE VAEHGEEGLR  120
DAEGEEHVYG DVDALPRRPD LQREDLRRSV VVATNSNKAS SGDNSNGGGN SNTKLEDGYN  180
WRKYGQKQVT GSENLRSYYK CTYHSCSMKK KVERSLADGR ITQIVYKGGT TTRSRSRRAA  240
TPSVAPRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6830041e-103AY683004.1 Zea mays monosaccharide transport protein 1 (MST1) mRNA, complete cds.
GenBankBT0677811e-103BT067781.1 Zea mays full-length cDNA clone ZM_BFc0156K13 mRNA, complete cds.
GenBankEU9566331e-103EU956633.1 Zea mays clone 1568576 sugar transport protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5V1I92e-34A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGPavir.J27870.1.p2e-33(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-22WRKY DNA-binding protein 33