PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012695.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 115aa    MW: 13900.1 Da    PI: 9.9311
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012695.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS110.42.4e-342114262374
        GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                  ++s+lfd+le+++ r +e+r  +Ere++gre+ nv+aceg+er+er et+++W++r  +aGF+p+pl+e+++k+a++ ++k + + + v++++ ++++
  Do012695.1   2 FFFSSLFDMLEVNATRVDEQRLLIEREFFGREALNVIACEGTERIERPETYKQWQMRNLRAGFRPLPLQEEIMKKARYKVSKSYHRDFLVDKDNRWMLQ 100
                 689*********************************************************************************999************ PP

        GRAS 361 gWkdrpLvsvSaWr 374
                 gWk+r ++++SaW+
  Do012695.1 101 GWKGRVIFALSAWT 114
                 *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.723194IPR005202Transcription factor GRAS
PfamPF035148.5E-322114IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MFFFSSLFDM LEVNATRVDE QRLLIEREFF GREALNVIAC EGTERIERPE TYKQWQMRNL  60
RAGFRPLPLQ EEIMKKARYK VSKSYHRDFL VDKDNRWMLQ GWKGRVIFAL SAWTS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849085e-98KF184908.1 Saccharum hybrid cultivar R570 clone BAC 006C11 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793343.12e-70scarecrow-like protein 9
RefseqXP_025793344.12e-70scarecrow-like protein 9
RefseqXP_025793345.12e-70scarecrow-like protein 9
RefseqXP_025793346.12e-70scarecrow-like protein 9
SwissprotO809331e-44SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1E5VZK46e-80A0A1E5VZK4_9POAL; Scarecrow-like protein 9
STRINGPavir.Ia00281.1.p3e-67(Panicum virgatum)
STRINGSi034627m3e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5052622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.15e-47GRAS family protein