PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012698.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 281aa    MW: 31710 Da    PI: 8.4719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012698.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-164713311100
                 HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                 + +  l+lp ++++e g    ++ +l+l   e    W+v++  + ksg ++l++GW +F++a++L++gD ++F++dg  ++ l+v+vf++s
  Do012698.1  47 MHEEALRLPANYVKELGAR--RDLKLRLAGgEMMPLWDVEVFTDEKSGDMYLARGWTKFARAHDLRDGDLLIFRYDG--TAALTVTVFDRS 133
                 455669*******999866..666788877555599*****99*******************************988..45569***9985 PP
2B342.89.5e-141762501287
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +++ l +p +f ++hg+  ++ ++l+     grsW+v+l  ++++++    + ++ GW +F+ +ngL++gD + Fk++++
  Do012698.1 176 QNQYLNVPVEFQDAHGYARRRRVELR---MGGRSWSVNL--KRGKRAlgdrTAFKYGWHQFCVDNGLEVGDACFFKVIRE 250
                 5677999********99987876666...478*******..4444444556*************************8874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.71937133IPR003340B3 DNA binding domain
CDDcd100171.26E-1737131No hitNo description
SuperFamilySSF1019361.1E-1738135IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1339133IPR003340B3 DNA binding domain
PfamPF023625.8E-1348132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1650140IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.028163276IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871165276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21168276IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-11176250IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14178251IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-12180251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPGGVGRPRR GSVKERTAAA NRHGMAEEMA GPSLSDFEFF RILLPGMHEE ALRLPANYVK  60
ELGARRDLKL RLAGGEMMPL WDVEVFTDEK SGDMYLARGW TKFARAHDLR DGDLLIFRYD  120
GTAALTVTVF DRSTCRKQYV HANAAGGGMA GSRSLAIAEX SXXXVSLRRC NLGTKQNQYL  180
NVPVEFQDAH GYARRRRVEL RMGGRSWSVN LKRGKRALGD RTAFKYGWHQ FCVDNGLEVG  240
DACFFKVIRE GPCVDDDEEE WEDDEHVLKV EVRKKDGTML T
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985224.11e-156B3 domain-containing protein Os03g0212300
SwissprotQ10Q263e-88Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A1E5VZG10.0A0A1E5VZG1_9POAL; B3 domain-containing protein
STRINGSi036918m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]