PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012740.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 237aa    MW: 25272.1 Da    PI: 6.414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012740.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1862110355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr+++ +g+WvAeIr+p   + r +r++lg+f ta +Aa a+++a+ +++g
  Do012740.1  62 FRGVRQRR-WGKWVAEIREP---N-RgRRHWLGTFNTAIDAALAYDRAAVAFHG 110
                 8****998.**********8...3.35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.64161118IPR001471AP2/ERF domain
SMARTSM003801.0E-3261124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2961119IPR001471AP2/ERF domain
CDDcd000182.60E-2861120No hitNo description
PRINTSPR003677.7E-116273IPR001471AP2/ERF domain
PfamPF008472.0E-1162109IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2162119IPR016177DNA-binding domain
PRINTSPR003677.7E-11100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGVGLGSKEM GRAPAPVATS SATGTQQARA NGSANATPSA GRPRSVSAQR GLGGPDNTLH  60
NFRGVRQRRW GKWVAEIREP NRGRRHWLGT FNTAIDAALA YDRAAVAFHG NHAHLNFPAD  120
HATAVTIAVE APAQCHPASC SPATTADVFQ EHEVKPMLGA TQGAVRPEIV SQQQQQGVSW  180
VSPEVLFNDD PDDISMYIDF DAVAAMVPCY PGIKREDCQP EGFDGDAVHS PLWALGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1761118563ATERF1
3gcc_A6e-1761118563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1359243e-36AC135924.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0486C01, complete sequence.
GenBankAK1025593e-36AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
GenBankAK1038223e-36AK103822.1 Oryza sativa Japonica Group cDNA clone:J033147H24, full insert sequence.
GenBankAK1098553e-36AK109855.1 Oryza sativa Japonica Group cDNA clone:002-148-G01, full insert sequence.
GenBankAP0149613e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-36CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8342423e-36CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961770.11e-126dehydration-responsive element-binding protein 2D
TrEMBLA0A1E5VIG71e-175A0A1E5VIG7_9POAL; Uncharacterized protein
STRINGSi024427m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-22ERF family protein