PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012810.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 337aa    MW: 36324.8 Da    PI: 10.4065
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012810.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.54.8e-1536122186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++        +r   r+ +qCk++ + l+k+yk+++++++       s +++f++l+
  Do012810.1  36 CWSDGETTALVNAWGSRYVELNRGNLRQKQWQEVADAVnsrggpsVRRRPPRTDVQCKNRVDTLKKKYKAERARNSP------SGWSFFHELD 122
                 7*************************************9999999888889***********************997......47******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-2734124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEVREMALAA AAAAAVGGGG GKLPPPNPNL PYREDCWSDG ETTALVNAWG SRYVELNRGN  60
LRQKQWQEVA DAVNSRGGPS VRRRPPRTDV QCKNRVDTLK KKYKAERARN SPSGWSFFHE  120
LDRLVGPTLS ASASKRPSPS APQFALPFHP PAVRNHPTPS PSPPPPMALP LPNYNRRSPL  180
PAAALIHQAA AAAAAPVSDS EDSDDAGANN NHNSQRSPSH SLSSLSGNNK KRSRDESGSG  240
GDKGFGELAR AIEAFAEMYE RVESAKQKHA LEMERQRIEF LKQLEVKRME NFADAHVKLA  300
RAKRPKKTTG GAADGAGAME LVATVASLPF VSTSTFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961239.11e-166trihelix transcription factor ASIL2
TrEMBLA0A1E5VSX40.0A0A1E5VSX4_9POAL; Trihelix transcription factor ASIL2
STRINGPavir.J33948.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-30sequence-specific DNA binding transcription factors