PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do012864.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 189aa MW: 20543.8 Da PI: 6.5001

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do012864.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.4	4e-13	38	69	1	32
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfan 32 +CaaCk+lrr+Ca+dCvlapyfpa+qp+++a+ Do012864.1 38 RCAACKYLRRRCAPDCVLAPYFPASQPRRYAY 69 6***************************9986 PP
2	DUF260	42.6	1.8e-13	70	123	48	101
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do012864.1 70 SLPVQERGRAADTMATEARWRMQDPVYGCTGVIYRLQQEIRAVQHELARTRAQL 123 578899*******************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.799	37	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-11	38	68	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-11	71	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSSSSSSAGA GSMEVDHQQL LDYGGGGCGG GNNNNPRRCA ACKYLRRRCA PDCVLAPYFP 60 ASQPRRYAYS LPVQERGRAA DTMATEARWR MQDPVYGCTG VIYRLQQEIR AVQHELARTR 120 AQLAVHVQGT ALLQRTQQPT PLLPPPXPLA PAAAVAVHAG AHGVTVHEEE DEEAPLMDPD 180 EFLDLDGRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-20	39	123	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-20	39	123	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do012864.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683529.1	2e-61	LOB domain-containing protein 24
TrEMBL	A0A1E5VMB8	1e-136	A0A1E5VMB8_9POAL; LOB domain-containing protein 24
STRING	Si015521m	2e-67	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-30	LOB domain-containing protein 24