PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012986.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 261aa    MW: 27600.5 Da    PI: 6.1581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012986.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.7e-061161551054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Do012986.1 116 KLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 155
                 88******************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.217106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-6112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-7114160No hitNo description
SuperFamilySSF474592.49E-11115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-10116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAGQPPPPPP PGGAEDDFLE HFFAFPSAAS AGAAGGHAGA GAGGDHPFPL ALSLDAAAAK  60
QDRDTVQLAG LFPPVFGGGG VQQPHLRGPP PPQMFHPQPK PGEGAMAPQP PAPRPKLRRE  120
RIAERMRALQ ELVPNTNKTD RAAMLDEILD YVKFLRLQVK VLSMSRLGGA GAVAQLVADI  180
PLSVKGEASD SGSPQHIWEK WSTDGTEKQV AKMMEEDIGA AMQFLQSKAL CMMPISLAMA  240
IYDTQQPQDG HSLKPEPNTS S
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960751e-161FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-152transcription factor UNE12
SwissprotO227682e-63UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1E5UJT90.0A0A1E5UJT9_9POAL; Transcription factor UNE12
STRINGPavir.Ba03672.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]