PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012987.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 152aa    MW: 16325.6 Da    PI: 9.8481
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012987.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-172866240
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 i+n++nrqv fsk rngilKKA E+SvLCdae  v   
  Do012987.1 28 WIKNSINRQVIFSKCRNGILKKAREISVLCDAEFGVTAS 66
                69******************************9877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-201978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.4511969IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-182087IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-162141IPR002100Transcription factor, MADS-box
PfamPF003197.3E-142968IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-164156IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-165677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
LLGATADGAS PLSLTAPQPR RGKIEIKWIK NSINRQVIFS KCRNGILKKA REISVLCDAE  60
FGVTASSSSP APASSTTSAP QKDILTELSR AELEPIRALV EPSSSLTMSS NMNSGSLEPS  120
LHVFARARLV DSLTCNQTPS FLNQTHQIYA TK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929592e-54AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648492e-54BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UJY11e-106A0A1E5UJY1_9POAL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.23e-15AGAMOUS-like 16