PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012998.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 206aa    MW: 21583.2 Da    PI: 7.2737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012998.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191767155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Do012998.1 17 SRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 67
                789*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-131767IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-221776IPR016177DNA-binding domain
CDDcd000182.09E-181775No hitNo description
PROSITE profilePS5103223.4331875IPR001471AP2/ERF domain
SMARTSM003805.6E-371881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-321875IPR001471AP2/ERF domain
PRINTSPR003673.1E-101930IPR001471AP2/ERF domain
PRINTSPR003673.1E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRRGGGGVEA ADADVESRFR GVRKRPWGRY AAEIRDPAKK ARVWLGTFDS AEDAARAYDA  60
AARMLRGPKA KTNFPLPASH HHMPAAAAYT PYTTPNTSST PPLVARPACS SLSSTVESFG  120
GARPRPVLPP RPPPLPIPDD GDCRSDCGSS ASVVDDDCTD AAASPSCRLP LPFDLNLPAG  180
AGCGAGGGVG WCGDEEDELR LTALRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211976664ATERF1
3gcc_A2e-211976664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012998.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282067e-77KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951621.12e-84ethylene-responsive transcription factor 3-like
SwissprotO803391e-33ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1E5VLS81e-144A0A1E5VLS8_9POAL; Uncharacterized protein
STRINGPavir.Ab00660.1.p9e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-21ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]