PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013045.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 256aa    MW: 27020.4 Da    PI: 6.7797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013045.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.6e-40651641100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++ e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+++++
  Do013045.1  65 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALEAELEAVRA 163
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  Do013045.1 164 E 164
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.85964165IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4065162IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MHQTLGDRGN CWTSTCRERL DEIGKKIKRE PDTSALALAS ASTAPADNRV PRRLGLGGAI  60
NTVIPCAACK LLRRRCAQEC PFAPYFSPHE PHKFAAVHKV FGASNVSKML LEVAEGERAD  120
AASSLVYEAN LRLRDPVYGC MGAISVLQQQ VNALEAELEA VRAEILKHRY RQAGAGASLI  180
DDSHATASFV APAPPAPVHA GDVVSVVEAG QEVAAAGGAP GMSASSAVYV AEAERPSSTT  240
DHYSSLNPSE HAAYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-426516811114LOB family transfactor Ramosa2.1
5ly0_B7e-426516811114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686991e-157BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.
GenBankEU9716551e-157EU971655.1 Zea mays clone 368697 LOB domain protein 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970407.11e-129LOB domain-containing protein 15
SwissprotQ9AT612e-66LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A1E5VHX50.0A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRINGSi004575m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-62LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]