PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013544.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 22887.1 Da PI: 10.1432

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013544.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29	1.3e-09	12	57	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie+++ r+ tf k g++K + LS+L++++v v++ ++ ++ Do013544.1 12 FIEDDRDRSLTFFKWHSGLFKATSDLSTLTGMRVVVVLELENERFS 57 8***********************************9877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-4	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.021	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-11	6	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.9E-12	12	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MPRRGRRLGV RFIEDDRDRS LTFFKWHSGL FKATSDLSTL TGMRVVVVLE LENERFSSFG 60 TPDASPIVDA FFPWDAPTEF DTSEEQKAKT TILQNEQFQL EKYKAMGNKR KKEKLARIKE 120 MQETSRTFKY AYGCDATKVF SIGSLTSILP IASMVIHSSS SASKVRLLAS KANDASITTD 180 TTKTAVVPFG AMYSFHRATP STTT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013544.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971997.1	2e-62	transcription factor RLM1
TrEMBL	A0A1E5VN03	1e-148	A0A1E5VN03_9POAL; Uncharacterized protein
STRING	Si003866m	5e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3089	22	76