PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013580.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 259aa    MW: 27405.8 Da    PI: 6.5034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013580.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+ l  +v+++G+g +W + +++ g++R++k+c++rw++yl
       Do013580.1 14 RGPWSPEEDDALRTYVQRHGSGgNWIAMPKKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding43.38.6e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd  ++ +  qlG++ W++Ia+ +  gRt++++k++w++
       Do013580.1  69 GGFTDEEDAVIISLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.773962IPR017930Myb domain
SuperFamilySSF466891.18E-2712109IPR009057Homeodomain-like
SMARTSM007173.1E-121364IPR001005SANT/Myb domain
PfamPF002496.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241569IPR009057Homeodomain-like
CDDcd001671.57E-91662No hitNo description
PROSITE profilePS5129422.19263117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002498.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
CDDcd001675.87E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRTPCCDRA AVKRGPWSPE EDDALRTYVQ RHGSGGNWIA MPKKAGLKRC GKSCRLRWLN  60
YLRPDIRHGG FTDEEDAVII SLYSQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA  120
AATADVVSTP SPPPILRLPA APFLTPAATT TAHASLLRFP SLAIPTVKTE TYTCDDFLAP  180
AVLLGDDPFA AAGGSADAAA DGSTSASAGS SASNWSADNG GEGSFLLDFC AGSDLGSAGD  240
HLQLPGGYYY PLDPSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794161e-161HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-136transcription factor RAX2
SwissprotQ9SJL72e-66RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1E5VUX10.0A0A1E5VUX1_9POAL; Transcription factor RAX2
STRINGSi002629m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-62MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]