PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013591.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19505.5 Da    PI: 11.6005
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013591.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94e-265199351
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                i + + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  Do013591.1 51 IRDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALVVFSPAGRLYEFAS 99
                7899*******************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-2831100IPR002100Transcription factor, MADS-box
CDDcd002651.18E-3133105No hitNo description
PRINTSPR004041.6E-204363IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-2450111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.92251101IPR002100Transcription factor, MADS-box
PfamPF003192.0E-255197IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-206378IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-207899IPR002100Transcription factor, MADS-box
SuperFamilySSF813833.4E-6111158IPR001810F-box domain
Gene3DG3DSA:1.20.1280.503.5E-4123157No hitNo description
PfamPF006464.7E-5124158IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEREEEAAAR RAERQLLQQQ QQQETASKGK RKRGRVELRR IEDRTSRQMC IRDRTSRQVR  60
FSKRRSGLFK KAYELSVLCD AQVALVVFSP AGRLYEFASS SSRPITRLPL RSASPRDAIA  120
MADWTGLNED LLNLIVVRLP SLDLLRFCKV CASWRTAVAA FTARPTPPRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A4e-15511001059Myocyte-specific enhancer factor 2B
1n6j_B4e-15511001059Myocyte-specific enhancer factor 2B
1tqe_P3e-15511001160Myocyte-specific enhancer factor 2B
1tqe_Q3e-15511001160Myocyte-specific enhancer factor 2B
1tqe_R3e-15511001160Myocyte-specific enhancer factor 2B
1tqe_S3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_A3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_B3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_C3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_D3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_E3e-15511001160Myocyte-specific enhancer factor 2B
6c9l_F3e-15511001160Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429802e-52AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
GenBankAP0055292e-52AP005529.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0702E04.
GenBankAP0149642e-52AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY1777012e-52AY177701.1 Oryza sativa (japonica cultivar-group) transcription factor MADS37 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.11e-35MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.11e-35MADS-box transcription factor 51-like isoform X1
TrEMBLA0A3L6PT543e-41A0A3L6PT54_PANMI; MADS-box transcription factor 56-like
STRINGPavir.J26790.1.p1e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-25AGAMOUS-like 14