PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013627.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 265aa    MW: 27484.8 Da    PI: 8.4714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013627.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-0587109123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C + F ++  L  H++ H
  Do013627.1  87 FKCNYCQRKFYTSQALGGHQNAH 109
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.09E-783114No hitNo description
Gene3DG3DSA:3.30.160.600.00185113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57287114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEVEGAGLQV QEGEEEVQAR EKEDEAPAKE LDLLGVLGSE APEVKAVEAQ AVAPGKGKEK  60
ALVLEEEKAP APATATASSG GVKKRSFKCN YCQRKFYTSQ ALGGHQNAHK RERSLAKRGA  120
AAAAAAAAAA GRGLYGGADP FLPAHHLRFP HAWPYSAGGG RPLSSFLGLG RGSAAAAPSY  180
SVHHGWAGHA HAHAQPSMAG LARHAGAERP VYAPPGYGYG APSRAPSPAV LDSGMAGLRW  240
AGVAHEVPQQ QEEGQSCKID LNLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-41HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.11e-123zinc finger protein GIS3-like
TrEMBLA0A1E5W1J10.0A0A1E5W1J1_9POAL; Uncharacterized protein
STRINGPavir.Ia01442.1.p1e-120(Panicum virgatum)
STRINGSi014969m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-14zinc finger protein 4