PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013649.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 224aa MW: 24328.5 Da PI: 7.1374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013649.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	37	66	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 r++ + erE+ Rd++N+ f eL +l ++ Do013649.1 37 RKVHKAEREKHKRDHLNDLFIELGNMLVES 66 678889*******************99984 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVPSERGSVA TAVSTPAADK LLHGPIAGKK CKKAAPRKVH KAEREKHKRD HLNDLFIELG 60 NMLVESLRKE HSNLQNESHY VAIERNELQD ENGMLRKEIS ELQDDLRMRT SSNPAGWGHG 120 TAGLSPPVPH PTSAVFSSQQ AMQPPTIAST VFPLHQALAP SAVIEQSYAT PPPLELRLFP 180 GAASVEVHEP SEGQDAPNHV ARPQASYESG MINVSIQLIA KLGQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013649.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984211.1	1e-120	transcription factor BHLH062
TrEMBL	A0A1E5UW03	1e-163	A0A1E5UW03_9POAL; Uncharacterized protein
STRING	Si037016m	1e-120	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-20	bHLH family protein