PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013705.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 213aa    MW: 23852.5 Da    PI: 4.8867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013705.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-0874118344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
       Do013705.1  74 QWTPKQNKLFEQALAVYDKDtpdRWHNIARAVGGGKSAEEVRRYY 118
                      7******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.61069IPR001005SANT/Myb domain
SuperFamilySSF466896.89E-61050IPR009057Homeodomain-like
PROSITE profilePS500904.3791452IPR017877Myb-like domain
CDDcd001670.004421452No hitNo description
PROSITE profilePS5129310.6770126IPR017884SANT domain
SMARTSM007178.5E-871124IPR001005SANT/Myb domain
PfamPF002493.7E-673118IPR001005SANT/Myb domain
SuperFamilySSF466896.23E-1174129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-474128IPR009057Homeodomain-like
CDDcd001678.58E-675121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASGGSSRGS TRGWTQRQNK QFECALAVYD RETPDRWHNV ARYMGGTKSA EEELSSGKVK  60
EMASLSMTSS VRAQWTPKQN KLFEQALAVY DKDTPDRWHN IARAVGGGKS AEEVRRYYEL  120
LEKDIEHIES GKVPFPAYRC PSGAGALGYQ ADRYAEASED LGEQIEDDGE EGRARTEYCL  180
DIVLFQQILQ GISMQRSTGY IFFAAIDDNS VLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-26751431178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078583e-85AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209883e-85AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415283e-85AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149613e-85AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-85CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363543e-85CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SIJ52e-28RADL2_ARATH; Protein RADIALIS-like 2
TrEMBLA0A1E5UUT96e-60A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-29RAD-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]