PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013707.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 256aa    MW: 27610 Da    PI: 9.3563
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013707.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68.1e-303486357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  vrY+eCl+NhAa+lGgh+vDGCgEfmp  g+    +alkCaACgCHR+FHR++ 
   Do013707.1 34 VVRYHECLRNHAAALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDD 86
                 69**************************8555..589****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-253585IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-183585IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-253685IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.313785IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-30167234IPR009057Homeodomain-like
SuperFamilySSF466894.28E-19169233IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-27176232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGASPAPPQL APRAASASAP AAADPGNHAA LPEVVRYHEC LRNHAAALGG HVVDGCGEFM  60
PGAGAGDDAL KCAACGCHRS FHRKDDGQRR HQLLLPEPAP PPPVTPTAPR VPLLLPPPHP  120
YTAAASHLHY ATPPPPPFPY HGTPSGSGGT TTESSSEERG PPSAHGAAAA QGHLRRKRFR  180
TKFTPEQKEQ MLAFAERLGW RMQKQDEALV QQFCEQVGVR RQVFKVWMHN NKHSGSGSRR  240
QPQLPPQEQQ SQQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-281772381879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.11e-115zinc-finger homeodomain protein 6-like
SwissprotB8AX531e-88ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A1E5UW860.0A0A1E5UW86_9POAL; Zinc-finger homeodomain protein 6
STRINGPavir.J15638.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-27homeobox protein 21