PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013739.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 113aa    MW: 12513.9 Da    PI: 4.2147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013739.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.83.4e-1312100290
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                 ppG+ FhP d+elv ++L ++v g++  ++   vi++    ++ Pw+L k++   +++e yf ++++ ++ +  r+ r    g W    + +
  Do013739.1  12 PPGVNFHPDDDELVEFFLLPSVCGEPawFPGVVVIEDDSAANTLPWRLLKRHGLgDDDEAYFLVHTNDAE-EVARQDRYCV-GGWTRVSQ-R 100
                 8*************************776665679999**********8554442556888888887765.5789999765.77986654.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-15493IPR003441NAC domain
PROSITE profilePS5100515.18511113IPR003441NAC domain
PfamPF023651.0E-71298IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MSTRAAEILG HPPGVNFHPD DDELVEFFLL PSVCGEPAWF PGVVVIEDDS AANTLPWRLL  60
KRHGLGDDDE AYFLVHTNDA EEVARQDRYC VGGWTRVSQR SVSDDSCIGG EKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.11e-32NAC domain-containing protein 48
TrEMBLA0A1E5VKK13e-78A0A1E5VKK1_9POAL; Uncharacterized protein
STRINGSi019235m4e-53(Setaria italica)
STRINGSi019271m5e-53(Setaria italica)
STRINGSi019812m4e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-08NAC-domain protein 101