PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do013762.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HSF

Protein Properties

Length: 341aa MW: 36133.6 Da PI: 5.9143

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do013762.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	98.3	7.7e-31	11	136	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......................X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......................k 75 Fl+k+y ++ed++++++isw++ g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+Y ++ + ++s+ k Do013762.1 11 FLTKTYAMVEDPSTDDTISWNDAGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYVRTQPPPPFRTSSPtqrsarldrdhdgfcvlsvqgfrK 107 9********************************************************75555444443322555666899999998888877661 PP ..TTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ..ekiweFkhksFkkgkkellekikrkks 102 + weF+++ F++g+k+ll i+r+k Do013762.1 108 vvADRWEFANDGFRRGEKHLLGGIQRRKG 136 569*********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.5E-28	7	134	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.1E-34	7	134	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-45	7	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-14	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-28	11	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-14	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-14	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.20.5.170	9.7E-4	183	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASPAAGTPP FLTKTYAMVE DPSTDDTISW NDAGTAFVVW RPAEFARDLL PKHFKHSNFS 60 SFVRQLNTYV RTQPPPPFRT SSPTQRSARL DRDHDGFCVL SVQGFRKVVA DRWEFANDGF 120 RRGEKHLLGG IQRRKGTGAA GAGPGVVIPS GIPIISSPPT SSGGEPAVSS SPPRGSAAGV 180 SGAVAELEEE NARLRRENAR LARELARARR LCDGVRQLVA RYDHGGGEED PAEGDEGHGG 240 SGGGPSGHGA KPMLFGVAIG AKRPRDAEDG DEEDGDDGTA EEDGEEDEEQ GDDERHSGRG 300 RGSKAARRNE MSDLDVLALS VRAAAAARPG GGSRDRKSSV S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	8e-19	1	134	11	120	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do013762.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970862	1e-113	EU970862.1 Zea mays clone 352519 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976526.1	1e-153	heat stress transcription factor B-2a-like
Swissprot	Q7XRX3	1e-113	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A1E5VLV9	0.0	A0A1E5VLV9_9POAL; Heat stress transcription factor B-2a
STRING	Sb06g025710.1	1e-138	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	4e-41	HSF family protein

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]