PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013768.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 240aa    MW: 26617.4 Da    PI: 9.864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013768.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.81.5e-2643144199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+kv tpsdv+k++rlv+pk+fae+h         ++++ l + d +g   W+++++y+ +s++yv+tkGW+++v++++L +gD+v F    r++++l+
  Do013768.1  43 FEKVVTPSDVGKLNRLVVPKHFAEKHlplpgAAARAGGTVLCFHDARGqAAWRFRYSYWSSSQSYVMTKGWSRYVRDKRLAAGDTVSFC---RDGARLF 138
                 99***************************98555678899*****888789**************************************...4667788 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 +  +r+
  Do013768.1 139 IDCRRR 144
                 888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3439147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2841144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1941135No hitNo description
SMARTSM010195.5E-1943145IPR003340B3 DNA binding domain
PROSITE profilePS5086312.71743145IPR003340B3 DNA binding domain
PfamPF023622.5E-2343144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MALTLALESR SRSSDDRREG AAAGGLQAAE GIGDSHGARE RMFEKVVTPS DVGKLNRLVV  60
PKHFAEKHLP LPGAAARAGG TVLCFHDARG QAAWRFRYSY WSSSQSYVMT KGWSRYVRDK  120
RLAAGDTVSF CRDGARLFID CRRRRRSAGA AAMPSPAFLV PPQRQQQQQQ ACFFPQKVAV  180
QVQQHLLVAP RVVVDDEVAA VAMEEEETRR GRCLRLFGVN LELELELRAA GEPLLLDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-424015511128DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269653e-95KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681403.12e-70B3 domain-containing protein Os06g0107800
SwissprotQ5VS557e-55Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A1E5VK671e-173A0A1E5VK67_9POAL; B3 domain-containing protein
STRINGSi008509m9e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-38related to ABI3/VP1 1