PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013900.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 252aa    MW: 27070.3 Da    PI: 9.6252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013900.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17102152356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr ++ +g+++AeIrd + ng   r++lg+f +ae Aa a+++a+ +++g+
  Do013900.1 102 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFESAEAAALAYDQAAFAMRGA 152
                 9*******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-22101161IPR016177DNA-binding domain
PROSITE profilePS5103222.985101159IPR001471AP2/ERF domain
SMARTSM003802.0E-35101165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29101160IPR001471AP2/ERF domain
PRINTSPR003675.5E-10102113IPR001471AP2/ERF domain
PfamPF008472.3E-12102151IPR001471AP2/ERF domain
CDDcd000181.06E-13102136No hitNo description
PRINTSPR003675.5E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVTSKSSGGG GSTTQQQQSS PVSLHLSTGI VGFLARRAMS THTQRPSQQP GVALDSPGSS  60
SGSVESAAPW STPLVQQEQE HPGPAAVPLE SNEDDTEKVA TYRGVRKRPW GKFAAEIRDS  120
TRNGVRVWLG TFESAEAAAL AYDQAAFAMR GAAAVLNFPV ERVRQSLEGM GMGMRLGRMD  180
GSPVLALKRR HSMRMRPARR RGKTAGRSEV MELEDLGTEY LEALLGATAT AATTTEEEQS  240
PLTSWCQSRH SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27102160664ATERF1
3gcc_A3e-27102160664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699804e-85BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985293.19e-82ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y96e-51ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1E5VYJ10.0A0A1E5VYJ1_9POAL; Uncharacterized protein
STRINGSi038911m1e-80(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-27ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]