PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013906.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 171aa    MW: 17791.4 Da    PI: 9.3027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013906.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.3e-1152128587
                 -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 + +s+v +  ++v+p++ a           +      + +gr+We+++  +++++   l++GW++F+ +ngL+ gD ++++l++ 
  Do013906.1  52 MCKSHVYAPFQVVVPRSLAPFLpaAT---VP---AAVTWRGRTWEMRF--TGGRQIQRLEAGWRGFALDNGLRLGDGCILELVEG 128
                 56677777777777777774442211...11...2234689*******..9999999************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1245129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1445129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-1046125No hitNo description
PROSITE profilePS5086310.34848150IPR003340B3 DNA binding domain
PfamPF023621.1E-849128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MASNAALKGK SAVVSSSAAE KSGEATGSPA AAEGVQPRML PLMGKPYFTC IMCKSHVYAP  60
FQVVVPRSLA PFLPAATVPA AVTWRGRTWE MRFTGGRQIQ RLEAGWRGFA LDNGLRLGDG  120
CILELVEGGG GAEGEGGGAV VFRAQVLRAD IPAAIRDRAG GYTSSSPILI D
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9541642e-82EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975400.15e-80B3 domain-containing protein Os04g0386900
SwissprotQ7XLP43e-66Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A1E5VTB81e-119A0A1E5VTB8_9POAL; B3 domain-containing protein
STRINGSi012575m1e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]