PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013977.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 231aa    MW: 25039.2 Da    PI: 6.5841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013977.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-40581571100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk++la++++
  Do013977.1  58 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTTHRVFGASNIIKLLQELPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLARAQA 156
                 7**********************************************************************************************9987 PP

      DUF260 100 e 100
                  
  Do013977.1 157 D 157
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.3457158IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4058155IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDYGNGSTAG TTTAPQQQQY SCPFVSPPSR VSSCSPPPPP PPAVQVVGNV PPTVVLSPCA  60
ACKILRRRCA DGCVLAPYFP PTEPAKFTTT HRVFGASNII KLLQELPESS RADAVSSMVY  120
EAEARLRDPV YGCAGAVCRL QKQANELKVQ LARAQADLLN AQAQHANLLA LVCVEVANHR  180
DSHHHQQQQH HNQSPLMDGG RDLGAAAYQM FYDSDDLDSA TWPDHEAQLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-415716010113LOB family transfactor Ramosa2.1
5ly0_B2e-415716010113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539370.0EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987050.21e-115LOB domain-containing protein 1
SwissprotQ9LQR02e-64LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1E5VLX91e-170A0A1E5VLX9_9POAL; LOB domain-containing protein 1
STRINGPavir.Ib01336.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-53LOB domain-containing protein 1