PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014091.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 304aa    MW: 33023.2 Da    PI: 5.5967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014091.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-173177349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                i     r+v fskRrng+ KKA EL+vL++a  a+i+fs+ +k y y
  Do014091.1 31 IACPEARHVCFSKRRNGLYKKATELCVLTGAHLAIIVFSPADKPYSY 77
                5556679*********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-252180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.3712181IPR002100Transcription factor, MADS-box
CDDcd002653.42E-332292No hitNo description
SuperFamilySSF554554.19E-252291IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-152343IPR002100Transcription factor, MADS-box
PfamPF003192.4E-213077IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-154358IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-155879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKEAERVAE AGGERKRKKT LGRQKIEIKR IACPEARHVC FSKRRNGLYK KATELCVLTG  60
AHLAIIVFSP ADKPYSYGHP SVNAVLDRYL DPASYVPPPA GEATRPEVPL EYENECERLG  120
EAIKAEGSRR LELDAAARAA GVWTDDDVRR AGMPDLAALL AALERVQAEA AEREGEILAE  180
KSMMQQWAST GAASDAFQFQ YPGAGTFTAD GVADRSSHQE VMDMQMMLMG GNVGHAAHAP  240
LPFAPMMLPP DLPPQPPFNY GYDHNHIAGY AGYGFNLGHG SGHGAAYESE GCYETTTTTC  300
NFFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11418RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954705.21e-106MADS-box protein FLOWERING LOCUS C
TrEMBLA0A1E5W0850.0A0A1E5W085_9POAL; Uncharacterized protein
STRINGSi019299m1e-105(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-28M-type_MADS family protein