PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014153.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 117aa MW: 12416.9 Da PI: 6.5098

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014153.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.7e-11	80	107	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 ++h+e+ErrRR+riN +++Lr+++P + Do014153.1 80 KSHSEAERRRRERINAHLATLRTMVPCP 107 58************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-8	70	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.88	77	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	80	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-9	81	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MGSVPFSDAG LLDGFYGGFG FGGGHGYDDY GVGQPRASTS PVLLDGGTEE VDGAAASAEL 60 MEAPKRKGDH RAEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCPDKV SVCFSFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	90	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014153.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002745	2e-45	AP002745.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489G09.
GenBank	AP002861	2e-45	AP002861.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0665D10.
GenBank	AP014957	2e-45	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	2e-45	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818650.1	3e-38	transcription factor bHLH30-like
TrEMBL	A0A1E5VIC3	1e-79	A0A1E5VIC3_9POAL; Uncharacterized protein
STRING	Pavir.Ea00157.1.p	6e-40	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20999	6	7