 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do014185.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
C2H2 |
| Protein Properties |
Length: 186aa MW: 19874 Da PI: 8.2175 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do014185.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.4 | 2.6e-05 | 161 | 183 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ + L+ H + H
Do014185.1 161 PCKSCSKTFNSEMALQAHSKAkH 183
6*****************88777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 186 aa
Download sequence Send
to blast |
QAALGESKKS DNALMYVKVD DQKLAIGTLS PDKYPQIQFD LVFDKEFELS HTSKAASVFF 60
SGYKDSSDEG DSSEDDEESD EDEEETPKKP EVGKKRAAEN SLKTPVSDKK AKVATPSGQK 120
TGGKKGAAHV PTPHPAKQAS KTPANSDKSK EKSPKSGGSV PCKSCSKTFN SEMALQAHSK 180
AKHAGK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF255711 | 1e-47 | AF255711.1 Oryza sativa putative histone deacetylase HD2 mRNA, complete cds. |
| GenBank | AK063535 | 1e-47 | AK063535.1 Oryza sativa Japonica Group cDNA clone:001-117-B10, full insert sequence. |
| GenBank | AK072845 | 1e-47 | AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence. |
