PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014360.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

YABBY

Protein Properties

Length: 165aa MW: 18006.4 Da PI: 7.9929

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014360.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	133.2	3.2e-41	13	162	6	168
YABBY 6 sseqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 +eq+ yvqCnfC+ il+v vP +k+v+v+CG C+ +lsv+l ++ +a + +++++e +v+ ++s +++ e + + +l Do014360.1 13 LPEQLGYVQCNFCSXILLVGVPCGGglQLKTVAVQCGNCAGILSVTLPQSP---PAFVE-----LPPQVKEPGVDPPPWDSEESSGE----DCRERELA 99 589*****************976225789*********9987654...44444.....46678888888888887654433....33444455 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ p v++PP ++qr Psayn+fikeei+rika +P+i+h+eafs a+knWah+P+i Do014360.1 100 AAGNHAFP---AVNKPPMRKQRTPSAYNCFIKEEIRRIKARDPNITHKEAFSSASKNWAHLPRIQQ 162 56666666...69************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.1E-43	14	161	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-7	109	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.0E-5	115	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MASAARHPCF GLLPEQLGYV QCNFCSXILL VGVPCGGGLQ LKTVAVQCGN CAGILSVTLP 60 QSPPAFVELP PQVKEPGVDP PPWDSEESSG EDCRERELAA AGNHAFPAVN KPPMRKQRTP 120 SAYNCFIKEE IRRIKARDPN ITHKEAFSSA SKNWAHLPRI QQKEN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014360.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958092.1	9e-94	protein YABBY 7
Swissprot	A2PZN8	8e-52	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A1E5VTU6	1e-118	A0A1E5VTU6_9POAL; Protein YABBY 7
STRING	Pavir.Ba00601.1.p	4e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-35	YABBY family protein