PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014387.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 234aa    MW: 25563 Da    PI: 4.5904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014387.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.67.7e-212893359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
        WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59
                Dgy+WrKYGqK+++g+ ++rsYYrCt +   gC++k+ v+r+++ ++        +++Y geH+++
  Do014387.1 28 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCHAKRTVQRNDDAGDggaatpEYTVVYMGEHTCT 93
                9*************************988889*********99644322221146899*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-231293IPR003657WRKY domain
SuperFamilySSF1182902.62E-202293IPR003657WRKY domain
SMARTSM007744.2E-262694IPR003657WRKY domain
PfamPF031068.1E-232892IPR003657WRKY domain
PROSITE profilePS5081117.3052869IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRWPPLCRRT KQEKSSTSSL VTSVPDFDGY QWRKYGQKQI EGAMYARSYY RCTRSAEQGC  60
HAKRTVQRND DAGDGGAATP EYTVVYMGEH TCTANDSLEA PVILETTAVV PADTSTNKRP  120
QEHHDDRTNS IAPTSSGSCS GTTTATGIAS PAISEDITWS SSSSSDYVDD YDYGSFAVHD  180
SWPAPPAAAP ATLQEMEDYF TGPIRSPVHV AAADGWTIDQ LLLQLVNEPI FCNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-131892168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586201e-94KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977390.14e-88probable WRKY transcription factor 58
TrEMBLA0A1E5W2C81e-174A0A1E5W2C8_9POAL; Uncharacterized protein
STRINGSi010813m1e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-16WRKY DNA-binding protein 54