PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014460.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 269aa    MW: 30631.1 Da    PI: 9.6852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014460.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-131442202196
                 HH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  21 kfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + +++h       ++ +++++ ++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l ++++f  ++ +
  Do014460.1 144 TMVRSHvsscfwlENLPPREFRMVLEDEDGVEFDAVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEHDRF--KIYI 220
                 444444455588855567889****************..555444..***********************9987888..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-18134222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-14135222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-20139222No hitNo description
SMARTSM010191.6E-12141224IPR003340B3 DNA binding domain
PfamPF023621.9E-11147221IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052166224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MATKASSAAS GAAYEEQRRK RVLENLKHME DLGISEMSKS LLQAARLQKQ NKVGVRTSPK  60
ARKKFDATEV RRSSRARATV SYKDDFGELD TFLRRKRRSG GRNTEQGREY TGRVSSYEQQ  120
QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLENLP PREFRMVLED EDGVEFDAVY  180
IGNRTGLSGG WRGFAMHHNL EDGDSLVFEL AEHDRFKIYI IKAIDDDAEE GESDDKNAIG  240
GTKEEPAQED SPDTEPPKGA KRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402171e-149BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds.
GenBankDQ2447641e-149DQ244764.1 Zea mays clone 10553 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.11e-170B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-130Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A1E5W5X70.0A0A1E5W5X7_9POAL; B3 domain-containing protein
STRINGPavir.J04157.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-32B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]