PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014592.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 434aa    MW: 45446.4 Da    PI: 5.5291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014592.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.3e-151152344
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                i n + r  tf kR++g+ KKA ELSvLC+++va+++++ +g
  Do014592.1 11 IPNRRVRVNTFGKRKEGLKKKAGELSVLCGVDVALVVAAADG 52
                668888999*****************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-15165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516152IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-17176IPR002100Transcription factor, MADS-box
CDDcd002662.43E-14240No hitNo description
PRINTSPR004044.8E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGRRKVSMGL IPNRRVRVNT FGKRKEGLKK KAGELSVLCG VDVALVVAAA DGGDGGAGAA  60
DVWESKEGVL ARYRALDPEV RARHTHRAYL QGELGKGEAK LARVRQGGPH GLDRWDKALD  120
GVATAEEAQQ LIDAVDAVIR ATDDRKKTLG LPIDDEDGGA GVVLEGIAPL SFAGVDDYLL  180
HAPGGDTNDQ AMWGGYGGFQ FQQGSAASMQ QAGYGFQPCA SSGGGAGMES YHLQMAPDMY  240
GNSDNNNGHL ALADAYQQYQ PRDAGTMPHG YGFPCAHASY FGLPSGYQMQ QQVLPQPDLS  300
MWCADEPRHD MLPLEYPSTD TGLSYADTPA AHGGQGIGGR PFAGNFINSP PALSLAMGTG  360
GGGGNFINAS PAGPSYTMGA TSDNFTNATA AQPLAISYGG DLTIAGSRYA TQWQAAPQPQ  420
HAGSDQKPGI EHLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.10.0developmental protein SEPALLATA 3-like
TrEMBLA0A1E5VMC40.0A0A1E5VMC4_9POAL; Uncharacterized protein
STRINGSi003942m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960