PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014624.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YB
Protein Properties Length: 249aa    MW: 27288.5 Da    PI: 6.2575
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014624.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.29.7e-4822104284
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++
  Do014624.1  22 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMR 104
                 89*******************************************************************************97 PP
2NF-YB139.87e-44120210494
       NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 +d++lPianv+rimk vlP +akisk a+et+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e
  Do014624.1 120 HDNLLPIANVGRIMKDVLPPQAKISKRARETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESE 210
                 6899*************************************************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-4419106IPR009072Histone-fold
SuperFamilySSF471136.06E-3424108IPR009072Histone-fold
PfamPF008081.1E-262790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-165573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-167492No hitNo description
Gene3DG3DSA:1.10.20.102.8E-40120212IPR009072Histone-fold
SuperFamilySSF471131.71E-32121213IPR009072Histone-fold
PfamPF008084.0E-23124187IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-16189207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MADHHGQPPG GGGAGPGADE IKEQDRLLPI ANVGRIMKQI LPPNAKISKE AKETMQECVS  60
EFISFVTGEA SDKCHKEKRK TVNGDDVCWA FGALGFDDYV DPMRRASDST SRDGNSELGH  120
DNLLPIANVG RIMKDVLPPQ AKISKRARET IQECATEFVG FVTGEASERC RRERRKTING  180
DDICHAMRSL GLDHYADAMR RYLQRYRESE ELAAALNSGS GGGGGAGIQI DVRAELSIFR  240
GNEQQDRNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-3721208192Transcription factor HapC (Eurofung)
4g92_B2e-3721208192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701981e-128EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814482.12e-83transcriptional activator hap3-like
SwissprotO822489e-48NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0E0CCP21e-116A0A0E0CCP2_9ORYZ; Uncharacterized protein
STRINGOMERI01G39560.11e-116(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-50nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]