PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014702.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26715.3 Da    PI: 8.0344
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014702.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1897151256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Do014702.1  97 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 151
                 78889************************************************98 PP
2HD-ZIP_I/II125.72.1e-4097185189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr+
   Do014702.1  97 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRA 185
                  69*************************************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1988154IPR009057Homeodomain-like
PROSITE profilePS5007117.18493153IPR001356Homeobox domain
SMARTSM003891.1E-1595157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-1895156IPR009057Homeodomain-like
PfamPF000465.8E-1697151IPR001356Homeobox domain
CDDcd000863.86E-1697154No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PfamPF021837.7E-11153186IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-21153196IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEQEEVGLAL GLSLGSGHHH LKEQPSPSSH SCALSLEPSL SLSLPAKDSS LATPVRIAAV  60
KRELQMEEDD EATDRALYSV ASSALAAADD DEGCNSRKKL RLTKEQSALL EDRFKEHSTL  120
NPKQKAALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE LLKRCCETLT EENRRLHREL  180
QQLRALHPHP ATFFMPAAAL SICPSCERVA GAPATTATGA DRPKAGGPGR AAHLFNPFTH  240
SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101SRKKLRL
2145153RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo014702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545801e-124BT054580.1 Zea mays full-length cDNA clone ZM_BFc0164J19 mRNA, complete cds.
GenBankEU9620301e-124EU962030.1 Zea mays clone 239717 homeobox-leucine zipper protein HAT22 mRNA, complete cds.
GenBankKJ7276181e-124KJ727618.1 Zea mays clone pUT5529 HB transcription factor (HB121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-155homeobox-leucine zipper protein HOX15
SwissprotQ7G7377e-82HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A1E5UUH41e-176A0A1E5UUH4_9POAL; Homeobox-leucine zipper protein HOX15
STRINGSi037189m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]