PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do014819.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

WOX

Protein Properties

Length: 137aa MW: 15119.3 Da PI: 4.8616

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do014819.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.8e-19	6	63	2	54
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 ++R+++t+eql +Lee++ + r+p+a+e+++++++l +++ ++V++WFqN++ Do014819.1 6 STRWCPTPEQLMILEEMYXSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKLS 63 58***************99********************************975 PP
2	Wus_type_Homeobox	108.7	3.3e-35	5	64	2	61
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRe 61 ++tRW+PtpeQ++iLee+y sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+k + Do014819.1 5 PSTRWCPTPEQLMILEEMYXSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKLSN 64 689*****************************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.665	2	67	IPR001356	Homeobox domain
SMART	SM00389	0.0078	4	71	IPR001356	Homeobox domain
CDD	cd00086	1.45E-4	5	60	No hit	No description
Pfam	PF00046	1.7E-16	6	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.42E-10	7	64	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-5	8	61	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYXSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KLSNQQLEEW DAAETMEHCN ANCGAASGSS DEGGAALQLP PCCRRPLXTL DLFPTKSTGL 120 KDECSSSKSS SCSTSTN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do014819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ536578	2e-79	AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene).
GenBank	BT066120	2e-79	BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds.
GenBank	JX469942	2e-79	JX469942.1 Zea mays subsp. mays clone UT3202 HB-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692532.1	8e-49	PREDICTED: WUSCHEL-related homeobox 3-like
Swissprot	Q6S3I3	3e-39	WOX3B_MAIZE; WUSCHEL-related homeobox 3B
Swissprot	Q70UV1	3e-39	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	M0TXB8	3e-43	M0TXB8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P04090_001	6e-44	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-35	WOX family protein

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]