PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015101.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 246aa    MW: 27013 Da    PI: 6.8751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015101.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ lv++v  +G g W+  ar  g+ Rt+k+c++rw++yl
       Do015101.1 24 KGPWTMEEDQVLVNYVGAHGEGAWNNLARAAGLSRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding56.85e-1877120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++
       Do015101.1  77 RGNFTAEEEELIVRLQARWGNR-WSRIAKHLP-GRTDNEVKNFWRT 120
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9371971IPR017930Myb domain
SuperFamilySSF466891.46E-3022118IPR009057Homeodomain-like
SMARTSM007172.9E-122373IPR001005SANT/Myb domain
PfamPF002494.9E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-232578IPR009057Homeodomain-like
CDDcd001678.68E-102671No hitNo description
PROSITE profilePS5129425.37372126IPR017930Myb domain
SMARTSM007173.8E-1676124IPR001005SANT/Myb domain
PfamPF002495.2E-1677120IPR001005SANT/Myb domain
CDDcd001672.95E-1479120No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2379125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQSSMDAGAS VQQVLPPEPA AVRKGPWTME EDQVLVNYVG AHGEGAWNNL ARAAGLSRTG  60
KSCRLRWLNY LRPDLRRGNF TAEEEELIVR LQARWGNRWS RIAKHLPGRT DNEVKNFWRT  120
KIEKKHRSKA ASYCSGAVVG GVITDGTCSV DDKSMSTPAS IEDQGSSNSG RTGVTHHYGI  180
VEQKPAISSM DYHQGCYDDD VRGGGGTSAA AVMADFFPPE FLAASGDNFW AIEDFWSTMQ  240
PFHGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271212518127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209862e-31AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209902e-31AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149612e-31AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-31CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808591.17e-99transcription factor MYB24-like
TrEMBLA0A1E5WMC70.0A0A1E5WMC7_9POAL; Transcription factor MYB21
STRINGSi024431m5e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-68myb domain protein 21