PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015230.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 256aa    MW: 27921.3 Da    PI: 9.2348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015230.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-0675100126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f ++G C y   C+FaHg
  Do015230.1  75 FKTKLCDKFEAGGKCAYEQGCTFAHG 100
                 69***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-1469107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-873105IPR000571Zinc finger, CCCH-type
SMARTSM003560.5574101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.01474102IPR000571Zinc finger, CCCH-type
SMARTSM003560.032140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5143165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605144167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MERDRDNAAV AAGAGAGRWD ASPNGVIVLP AGSAEPRHAR QQRERERERE QEQQNHPGDG  60
VFWGQQPEPP EKVYFKTKLC DKFEAGGKCA YEQGCTFAHG HAELRPPMPV PHERILKRKT  120
PPPPPPPQQQ PAAAVGPYGG IGKVCFWFRD RGTCHFGDRC SYAHASAAEV AEMRYPGGPR  180
SVEHALRNAP PLARAAYSPG CRSSSSSSSS YAPAATRAFP SAPAAAVGED GRKLTRLELL  240
SRKKMRGIYG DWPEEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.12e-98zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1E5VJ660.0A0A1E5VJ66_9POAL; Uncharacterized protein
STRINGPavir.Ea00381.1.p1e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-06C3H family protein