PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015253.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRF
Protein Properties Length: 230aa    MW: 24037.3 Da    PI: 9.8464
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015253.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.29.3e-26136180145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  Do015253.1 136 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEP 180
                 69****************************************986 PP
2QLQ53.28.7e-1970106137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  Do015253.1  70 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 106
                 799*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-670106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.22571106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-1171105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.839136180IPR014977WRC domain
PfamPF088793.3E-21137179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAEDKETDSP QPPAKLPRLS CADTSAGEVT MAASSPLVLG LGLGLGAGGS GGGERDAEAS  60
GATAAPKRAS ALTFMQQQEL EHQVLIYRYF AAGAPVPVHL VLPIWKSVAA SSFGPQRFPS  120
LMGLGSLCFD YRSSMEPEPG RCRRTDGKKW RCSRDVVPGH KYCERHVHRG RGRSRKPVEP  180
ASAAAATPTV AAPISSRVGA PVVHHSGAPP HGLGFSPTSV LLTHSAARAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278570.0KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955149.11e-130growth-regulating factor 10
SwissprotQ6EPP91e-95GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A1E5VFJ91e-164A0A1E5VFJ9_9POAL; Growth-regulating factor 10
STRINGSi018252m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.17e-36growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]