PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015255.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 309aa    MW: 33071.1 Da    PI: 8.4756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015255.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07106128426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f+++  C+yG+rC++ H+
  Do015255.1 106 RPCKYFLAGTDCSYGERCRYPHS 128
                 79******55**********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2682854IPR000571Zinc finger, CCCH-type
SMARTSM003560.132953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878102130IPR000571Zinc finger, CCCH-type
SMARTSM003560.0047102129IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4106128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5107137IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.76E-20133306IPR017986WD40-repeat-containing domain
SMARTSM003202.0E-6134173IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.2E-21137307IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.1E-6140173IPR001680WD40 repeat
PROSITE profilePS5008213.917141182IPR001680WD40 repeat
PROSITE profilePS5029412.842141182IPR017986WD40-repeat-containing domain
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM0032014219262IPR001680WD40 repeat
SMARTSM0032019265302IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHNRLGP GSGGAPSSTS GKVCNFWRAG RCNRFPCPYL HSELPEAAAP  60
PKRPAGPGGN VWRNPNSGGR GGGGHNRWGR GPGGGSGAAN HKPPDRPCKY FLAGTDCSYG  120
ERCRYPHSYC ISDSITMLTL LKGHEKGVTG IALPTGSDKL YSGSKDGTVR MWDCQTGQVW  180
NMQTAAEMNL TGPTGQVYAL AVASELLFAA TQVWAATESG NLEVTYTHKE EQGALALSGM  240
PDAQSKPVLL CSLNDNTVRL YDLPSFSDRG RLFSKQEIRA IQMGPGGLFF TGDGTGELKV  300
WQWVDGAQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0345661e-169BT034566.1 Zea mays full-length cDNA clone ZM_BFb0001E08 mRNA, complete cds.
GenBankEU9720871e-169EU972087.1 Zea mays clone 374674 nucleic acid binding protein mRNA, complete cds.
GenBankJX4285271e-169JX428527.1 Zea mays subsp. mays clone pUT3127 C3H34 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806289.11e-128zinc finger CCCH domain-containing protein 17-like
SwissprotQ0DYP51e-103C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A1E5VFI20.0A0A1E5VFI2_9POAL; Zinc finger CCCH domain-containing protein 17
STRINGOGLUM02G28370.21e-170(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.12e-53C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]