PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015336.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 257aa    MW: 28167.3 Da    PI: 6.9564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015336.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000322271154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +++ + e E+  Rd++N+ f  L ++l  +     +   Ka++L  A++ +++L
  Do015336.1 22 KKTHKAEQEKLKRDKLNDLFLDLGSMLDLD----RQNAGKASVLGDATRVLRDL 71
                6788899*******************9987....57788888888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-91988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-71989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3092171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFAGVENWKG RTQERSQGKT PKKTHKAEQE KLKRDKLNDL FLDLGSMLDL DRQNAGKASV  60
LGDATRVLRD LVTHVESLRK EQSALLSECH YVSSERNELQ EENAALKSQI SELANELCAR  120
MANTGLSLSS PGTSHPMANT TSPDLVIHPV PHQMWSDIPN LSSVATAHQT NTVSPLQSQQ  180
HSANDAEAYA VRPQELQLFP GASSSPEREP SRLRSAPTTS SSLTDSLPGQ LSLSLTQSSQ  240
EESTSSVLGR RKQQRNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826529.11e-118transcription factor BHLH062-like isoform X1
TrEMBLA0A2S3IF231e-117A0A2S3IF23_9POAL; Uncharacterized protein
STRINGPavir.Ha00418.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-35bHLH family protein