PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015345.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 341aa    MW: 35947.8 Da    PI: 6.9135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015345.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13130181155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Do015345.1 130 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 181
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-13128185No hitNo description
SuperFamilySSF474594.06E-17128200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-14130193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALEAVVFPK VLLACTVKAG VAAHSASLGC GFDIDELEEK GGVVLQEETT DALLLGAGAA  60
TTWDAALCPC SVAPGAVEEC WDAQHRHLSV SPPPPPVAAP GSGKAAASSA SRRRRRRPKA  120
VKNTEEMESQ RRNHIAVERN RRRQMNEYLA VLRSVMPPSY AQRGDQASIV AGAINFVKEL  180
EQLLQSLEAQ KRRAGCTEPP PPAPPFAGFF TFPQYSTSAV GGSSDSSGSA GGDQSGGGGC  240
AGARRGVADI EVAVAESHAN VKVLAPRRPR QLLRMVVALQ CLGLTVLHLN VTTTADHLAF  300
YSFSLKMEDE CRLSSVDDIA AAVNEIVAKI SDECVVSHLA A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RRRRRR
2131141RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381060.0BT038106.1 Zea mays full-length cDNA clone ZM_BFb0212B15 mRNA, complete cds.
GenBankKJ7268730.0KJ726873.1 Zea mays clone pUT3414 bHLH transcription factor (bHLH161) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.11e-174transcription factor bHLH94-like
SwissprotQ9C7T45e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1E5UPU40.0A0A1E5UPU4_9POAL; Uncharacterized protein
STRINGPavir.Aa00538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]