PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015366.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 199aa    MW: 21420.2 Da    PI: 7.7444
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015366.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029170192123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C++C+ +F ++  +  H+++H
  Do015366.1 170 YQCKICPATFVSSKAYGGHMSSH 192
                 9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-5170194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
LHEALVGTAA MQIMDPSSQS QPTNQPIFHA PQEPSKMPVH HNSTLPNCTD EPLPLSSPFP  60
HTVPTTVTPV SSIPFQARFA ANSIYQQQTL SSEHNFLTTP VSDYLSSSDR MAIMSMDAPS  120
ITSLLQGDPV AVLHAHLNII QGADLGPIFG NPTQSTSSSS MKNERGGHIY QCKICPATFV  180
SSKAYGGHMS SHSKAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VU641e-143A0A1E5VU64_9POAL; Uncharacterized protein (Fragment)
STRINGSi003986m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-07C2H2 family protein