PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015402.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 1038aa    MW: 114093 Da    PI: 4.5927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015402.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.61.5e-071713623127
         NAM  23 vegkkleleevikevdiykvePwdLpk..........kvkaeek.ewyfFskrdkkyatgk...rknratk..sgyWkatgkdkevlskkgelvglkkt 105
                 +++  ++  +++++vd++++ P +L +          + + + +  wyf++k++ k+a+gk   +++ra+   +  W++  + k v     ++ g+   
  Do015402.1  17 LRAGAVNN-SFVHRVDVCSAAPAELVTnlepvpgtdlT-EDGYNgVWYFYCKKRYKNAQGKpsgHRQRAIGggDTCWHSEARPKVVEG---SEGGTFCN 110
                 44444444.579*************7447788877532.22333599*********99877555556666623556**9999777655...55677788 PP

         NAM 106 Lvfy...kg.rapkgektdWvmheyr 127
                 L +    +g   ++ e+  W+m ey 
  Do015402.1 111 LSYGrknQGsAGRSFERLGWCMIEYD 136
                 88873222212223348899999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.0331153IPR003441NAC domain
SuperFamilySSF1019411.57E-1219153IPR003441NAC domain
SuperFamilySSF1019411.12E-8500590IPR003441NAC domain
PROSITE profilePS5100512.881620775IPR003441NAC domain
SuperFamilySSF1019411.1E-11645774IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MACKTIDGEL IALLRGLRAG AVNNSFVHRV DVCSAAPAEL VTNLEPVPGT DLTEDGYNGV  60
WYFYCKKRYK NAQGKPSGHR QRAIGGGDTC WHSEARPKVV EGSEGGTFCN LSYGRKNQGS  120
AGRSFERLGW CMIEYDDTRH GGGDHVLCKV YRSSSSLAKG KPKSSSSSSK STSSSKRKAA  180
GDHAEARPTK LIYDEQMQQD YTIFSNNYPM PCYEAMNPMF ADVEKQKYIE LDQGGEYGLV  240
PSTMAQANAQ ELIGCPAMIG GEEEQHLQQP SAELAQDSEF VETEYGLLPC EVAQINAEEW  300
ISCPEMFEGE ECQCLQQESG QPEQDGQDGE FVETPCGALV EAETTVEELL ELETTSGVGS  360
GMPLPGTVTP PDDDFFVDVD GESLFGVQEE EQSIQMQQQP RTDGDLFIGM DRECGFGVQE  420
EEHSLEMQQQ PCAEPDPMAD FIQSLTPRGP GLSLLPNPPS TRCSAMPWQQ QGSHWMQMQP  480
LQLPSPYRSR STDMAAKISD GELIALLRGL RAGVDNRFVH RVDVCSAAPA DLVANLEPVP  540
GTDSIWYFYS PKKYKNARGK TSGHRQRAIG GGDTCWHSEA RPKVVDGSEG GTFCNLSYGR  600
KKQGSAGRSF DRPAGSSTDM AADDSVSCTS DDASIALLRR LLAGATVHFV YHVDVCSAAP  660
EDFVADLEPV PGTDLTQYGY NSVWYFYSKK RYKNAQGKPS GHRQRAIGGG DTCWHSEARP  720
KLVEGSEGGT FCNLSYGRKK QGSSRSFDRL GWCMIEYDDM QHGGGDHVLC KVYRSTSSLA  780
KGKPKSSSSS SKSTSSSKRK AAGDHAEARP TKLIYDEQMQ QQHEEDTIFS DYYLMPCYEG  840
MNLMFGYVEY DVQQQQQQYV QLEQGGEYGL VPSTVAQVNV QERISCPEIF EGEVCHQHLQ  900
QQSGEPEQGA EFVEIPCGDR LVPLVSDETT MDELLDPKTT SGVGSGGVPL SGTVTPPHAD  960
FFVGLDPEYG FGVQEEEQSM EMRQQPRAEP DPMAEFIQSL KTPRGPGRSS WPNSPSTMAC  1020
QQQESHWMHP LQLPFLIC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5W7D30.0A0A1E5W7D3_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632