PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015462.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 225aa    MW: 23899.6 Da    PI: 4.1152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015462.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.73.5e-09252151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ie    r   fs  r+ ++  A EL+ L++a vav++fs+ g+ y +++
  Do015462.1  2 KSIECPEARCMCFSECRQDLFEEAIELCELTGAHVAVVVFSPAGNPYSFAT 52
                567777889999*********************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.76E-11160IPR002100Transcription factor, MADS-box
SMARTSM004320.0018153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.526154IPR002100Transcription factor, MADS-box
PfamPF003194.3E-13450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKSIECPEAR CMCFSECRQD LFEEAIELCE LTGAHVAVVV FSPAGNPYSF ATPPRRRDAL  60
DAAAREGGAW RTGDDMRRAG LPDLVPMLDA LERARDEAAE RAREIIVAEE AMTQQCAAAG  120
ASTFTADDGG AAGSSHQEGM DTQMMLIMGG GDVSHAAPAP LPFAPMMTLP PDLPPQPPFN  180
YGAGHNHIAG YDGYGLDLGD GGSNGDAYEM EGYYYGTTTT CNFFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954705.29e-41MADS-box protein FLOWERING LOCUS C
TrEMBLA0A1E5W9551e-164A0A1E5W955_9POAL; Uncharacterized protein
STRINGSb04g004410.14e-43(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-09AGAMOUS-like 61